PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G159800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 173aa    MW: 19347.2 Da    PI: 10.2897
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G159800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.6e-202170255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr ++ +gr++AeIr+ ++    ++r +lg+f+taeeAa+a++aa++ l+g
  Glyma.03G159800.1.p 21 HFRGVRKRP-WGRFAAEIREpWK----KTRKWLGTFDTAEEAARAYDAAARTLRG 70
                         69*******.**********883....5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.92E-172077No hitNo description
PfamPF008473.6E-132170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-302178IPR001471AP2/ERF domain
PROSITE profilePS5103222.552178IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-222179IPR016177DNA-binding domain
SMARTSM003801.2E-342184IPR001471AP2/ERF domain
PRINTSPR003672.0E-102233IPR001471AP2/ERF domain
PRINTSPR003672.0E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MPVHALPFSK DSPPPKPKEA HFRGVRKRPW GRFAAEIREP WKKTRKWLGT FDTAEEAARA  60
YDAAARTLRG PKAKTNFSYI LAPAFHLPPP VLTTPEAHAL AQAQAQEQLA RQVEFCGPPF  120
FFATDVASTA PVRSEYKGYK LENIAGFVVS KEEQKEKNKP FLFDLNLPAP LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-181877262ATERF1
3gcc_A2e-181877262ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520585.11e-123PREDICTED: ethylene-responsive transcription factor 12-like
TrEMBLK7KFC81e-123K7KFC8_SOYBN; Uncharacterized protein
STRINGGLYMA03G31640.21e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.16e-20ERF domain protein 12